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Automatic starting and stopping of program problem in DSP f28335

Hi all,

I am using f28335 to generate PWM pulses. I am using MATLAB embedded coder tool box to generate code for DSP. When I load and run the program in DSPf28335, intially it is giving pulses after sometime  it stops giving pulses. After sometime it once again starts to give pulses, and this goes on...

What is the reason for this? Help me in resolving this problem...

Thanks