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TM4C123GH6PZ: QEI not working at high temp

Part Number: TM4C123GH6PZ

I am using QEI with Renishaw quadrature encoder. I am also measuring pulses and voltage level through oscilloscope. 

Everything seems working well until CPU temperature reaches 62-63 degC. Above this temperature somewhere A,B and index pulses are missed and CPU never gets the index pulse. (If it gets, then it should reset the counter.) Scope shows voltage level seems matching at normal temperature v/s elevated temperature.  

Is any body has similar observation?