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TMDXIDDK379D: Motor vibrations using IDDK example CCS project

Part Number: TMDXIDDK379D

I am using the C2000 IDDK module to try and run a custom Permanent Magnet Synchronous Motor. I am using the QEP part of the position encoder suite. I am executing the level 5 incremental build, with Idref = 0, as is directed in the guide. However, the motor seems to vibrate with different intensities depending on the starting position. I am new to this and was wondering if anyone could point me in the right direction to understanding this problem. 

Thank you