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BQ3060: RM, RSOC, FCC etc not updating even after battery discharge

Part Number: BQ3060
Other Parts Discussed in Thread: GPCCEDV, EV2400

I have a Battery Pack with BQ3060 Fuel Gauge. I am having a problem where the following registers do not seems to be updating:

Remaining Capacity 0x0F

Absolute State of Charge 0x0E

RSOC

This is even after multiple cycle where battery has drained. The battery pack is designed to power a motherboard after main power source looses the AC power. Motherboard circuitry includes CPU, DRAM DIMMs,PCI-e devices which can consume about 250W of power. When battery is supplying power, I would expect that battery capacity will go down significantly. The pack capacity is 1000mAh.

For instance RM register always shows 91%. and even FCC does not seems to change at all.

What could be the issue here? 

Your help would be appreciated.