The datasheet is pretty clear that you can use either EN or FLT but not both:
From the pin description table on pp6-7 of datasheet:
EN/FLT - multi-function power converter enable input pin or fault output pin. Can only be used as either an input pin or an output pin.
That seems wrong. Have a look at the figure from the datasheet:
So, is the implementation in figure 9-4 correct and the text description wrong?