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MSP430F5529: Why jumper of MSP430F5529 should be removed from 3.3V while configuring with the USB to MDIO tool?

Part Number: MSP430F5529

Hello,

On the user guide of USB to MDIO tool, it is mentioned that, the 3,3V jumper from the isolation jumper block has to be removed, if the required voltage has to be applied.

I am trying to configure my Marvel PHY. The PHY ID's are all available when the jumper is not removed. However, the read and write operations do not give consistent values.

But, if the jumper is removed and an external supply is provided, all the PHY-ID's appear not available.

Is there anything that  i am missing on? Please looking forward for some helpful answers as i am a beginner here.

Regards,

Rakshan