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TMS320F28388S: issue of using GPIO qualification for PWM EXTSYNCIN1

Part Number: TMS320F28388S

HI Expert,

My customer are using two MCU for PWM sync up, mMCU generate EXSYNCCOUT event to sMCU which show as below waveform(purple waveform mMCU-GPIO37),

in sMCU, also use GPIO37 for PWM EXTSYNCIN1, and use GPIO3 for PWM EXSYNCCOUT just for test.

in both mMCU and sMCU, there will have PWM interrupt and use gpio to toggle to indicate when will the PWM ISR occur,

If use GPIO qualification mode for sMCU PWM EXTSYNCIN1 pin(GPIO37), then sMCU PWM ISR does not match with that of mMCU PWM ISR, which does not as expected. 

but  PWM EXSYNCCOUT in sMCU is correct and match with PWM EXTSYNCIN1 signal, only PWM ISR event is wrong. 

If they did not use GPIO qualification mode for sMCU PWM EXTSYNCIN1 pin(GPIO37), then everything is ok.

could you suggest is it ok to use GPIO qualification for PWM EXTSYNCIN1? any suggestion for this issue?