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TMS320F280049C: Different execution time for two project with the same source code

Part Number: TMS320F280049C
Other Parts Discussed in Thread: TIDM-1000

Tool/software:

I have two projects: Project One, which I created myself, and Project Two, which is the TI Solution TIDM-1000 (pfc3phvienna).

When I run the same source code in these projects with a 10kHz timer ISR interrupt, Project One has an execution time of 140ns, while Project Two has an execution time of 30ns.

Why is there a difference in execution time between the two projects? Does the TI solution have special settings to optimize execution time?