Tool/software:
Hi Champs,
Customer have 4 PWM signals output through the CLB module (TILE1), which are CLB Output 0, 2, 12, and 13, as shown in the red box in the figure below.

Output 0 and 2 are directly output to GPIO0 and GPIO1 through EPWM1A and EPWM1B. Outputs 12 and 13 are sent to GPIO3 and GPIO42 through the XBAR (290037C). According to the TRM, 12-15 are asynchronous to the CLB clock, which suggests that this causes the signals corresponding to GPIO3 and GPIO42 to be out of sync compared to GPIO0 and GPIO1.
In actual measurements, when 12, 13, 0, and 2 are connected to the same signal, GPIO3 and GPIO42 lead GPIO0 and GPIO1 by about 5-6ns.

How should the customer configure it to resolve this synchronization issue? Thank you!
Julia