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IO pin functions vs USB

Other Parts Discussed in Thread: F28M35H52C

I have designed the processor pinout using GPIO38 as MII_RXD2 and GPIO46 as MII_TXCK.  This is fine based on the technical reference manual and the pinmux utility.  I have discovered that the datasheet states that functions are not available for these two pins, therefore they can only be used for general purpose IO or  USB functions.

I need to find out what is real story with these two pins.  I am ready for layout but if I have to move these two pins it will take a significant amount of scrambling to get the functions I need.