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first occurrence of index pulse

 I am working with TMS320C28346ZEP .I set the function reset position on first occurrence of index pulse. It work fine after staring the progrm . I need now by software to restart this function while working,how it can be done? Another question why after restarting the program include inicialization of EQEP modul the flag FIMF is not reset (it is reset only after recompiling and reloading the program)?

My e-mail avi.keren@landalabs.com