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CCS/TMS320F2808: Flash not working as debug mode

Part Number: TMS320F2808


Tool/software: Code Composer Studio

Hello,

I am facing a very peculiar issue with my F2808 board. I am using the board in a 3 phase frequency converter design and everything works perfectly in debug mode. I then flashed my software to the board using the on chip flash programmer on ccs and ran the device as a standalone unit. But it seems to malfunction. Some operations seem to work in flash mode but not all of them. It is peculiar because in debug mode, i face no issues and it runs perfectly as expected.What could i be doing wrong? Any suggestion is welcome. Thanks for your time.

Srini