I have implemented the TPS61200 to regulate a 2xAA to 3.3V, whereas when EN is low (disabled) I see Vout is 2.5V. Not OFF as it supplies enough current to keep things kind of going. It is on my prototype. I was depending on the EN to be driven by button diode OR’ed with a PNP from the micro to clamp to VIN to either enable the power on or release the enable to a pull to GND. Shorted out the EN to GND and still see 2.5V on the Vout. I have gone over the designs and assembly, there is no SHORT between VOUT and VAUX.
To make things simpler I have removed Q1 and making the BUTTON a straight ON/OFF and still have the same symptom. I have also removed R2 so UVLO is tied to VIN, as it too, was causing problems.