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How to get accurate power measurements on Zynq706

Hi all,
I have two designs D1 and D2 such that both of them operate at the same clock frequency 148.5 MHz and synthesized over Zynq ZC706 board

For D1 the resource utilization was as following:

Slice Logic Utilization:
  Number of Slice Registers:                24,735 out of 437,200    5%
  Number of Slice LUTs:                     31,587 out of 218,600   14%

Slice Logic Distribution:
  Number of occupied Slices:                12,360 out of  54,650   22%
Specific Feature Utilization:
  Number of RAMB36E1/FIFO36E1s:                 18 out of     545    3%
  Number of RAMB18E1/FIFO18E1s:                 77 out of   1,090    7% 

While for D2 was :

Slice Logic Utilization:
  Number of Slice Registers:                49,848 out of 437,200   11%
  Number of Slice LUTs:                     77,056 out of 218,600   35%

Slice Logic Distribution:
  Number of occupied Slices:                27,116 out of  54,650   49%

Specific Feature Utilization:
  Number of RAMB36E1/FIFO36E1s:                 18 out of     545    3%
  Number of RAMB18E1/FIFO18E1s:                 78 out of   1,090    7%

For total Power estimated by Xpower Analyzer:
For D1 was 1593.51 mW and for D2 was  3931.84 mW

BUT when I measured them using the TiFusion tool for different rails for 10 min Data logging it was

               For D1			For D2:
Vout_1	       1,00			1,00								
Power_1	       1,013778177		1,223831187

Vout_2	       1,8 		        1,8
Power_2	       0,296198383 		0,302336234

Vout_3	       1,5 		 	1,5
Power_3	       0,055671582 	        0,057512424

Vout_4	       2,5                      2,5
Power_4	       0,271544563	 	0,232731928

Vout_5	       3,3	  		3,3
Power_5	       0,206161794		0,206130838

Vout_6	       1,7		 	1,7
Power_6	       0	                0
=================================================================
sum		1,8433545	        2,022542611

So Why does the Power estimated by XPower is differing so much from what I have measured practically by TiFusion ??

What are the acceptable area utilization of FPGA  to get accurate practical measurements ?? 

Is there some configurations that I should do for the tool to improve the accuracy of the measurements ??