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Supercap backup using the TPS65217C?

Other Parts Discussed in Thread: AM3358

I am considering using a supercap on the battery charging circuit, but understand that it will appear as a shorted output.  Will this work?  What I want is a way to provide uninterruptible power to a 5VDC powered digital system, based on the AM3358.  

The main idea being to initiate a power fail mode, where filesystems are put into a stable state before power disappears completely.  I want to prevent database corruption at the sudden loss of DC power and need a backup to do so.  It only needs to work for a short time, but needs to charge quickly.

I am using the TPS65217C.  Would a small battery be a better choice?