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CCS5 vs TFS

I am trying to store my projects in version control, specifically Microsoft Team Foundation Server (TFS). I stored everything in the project root directory including .ccsproject, .cproject, .project, and .xdchelp.

As a test I deleted the workspace and retrieved everything from TFS.  After reimporting all of my projects, ccs5 complained that the .cproject file was read-only, did I want to make it writable?  Well, no, that is always the job of source control. 

I get this problem with the two executable projects.  I do not get this problem with the library project.