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CCS v4 "loses" debug-related windows

I'm close to getting a 560v2 emulator working but now I have problems with the windows not appearing as they should. I don't think this has anything to do with the emulator (I have several and they all exhibit the same behaviour).

Flashing seems to work and when that has completed I have a source window, but no mixed source/assembly or disassembly. Instead of two overlapped red boxes (to terminate the debug session) I have only one. All stepping/execution choices/buttons are either grayed or not displayed.

Are there settings that will prevent future occurences of the problem?

This is hopefully a simple problem for someone who has once encountered it.