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CCS 4.0 Configuration/Dependency Interaction

I have a project that has 4 configurations: 2 Debug/Release variants times 2 EVM/Custom hardware variants.  For example DebugEVM or ReleaseCustom.  I have low level library code that is specific to the hardware platform.  My EVM configuration uses my EVM library and my Custom configuration uses my Custom library.  The library code is built as sub projects and the projects are added as dependencies to the main project.  In CCS4.0, I cannot get my configuration to choose one dependency or the other.  The dependencies are applied to all configurations.  Is there a work-around?

Thanks,

Chris