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sporadic errors programming LM3S9B96 with CCSv6

I just updated to CCSv6 and I'm starting to see some errors when I open a debug session.

I saw this output after what seemed to be a successful upload 

CORTEX_M3_0: GEL Output:
Memory Map Initialization Complete
CORTEX_M3_0: Trouble Reading Register SP: Debug Port error occurred.
CORTEX_M3_0: Error: Debug Port error occurred.
CORTEX_M3_0: Trouble Writing Register PC: Debug Port error occurred.

but then it stopped on a while loop as if it his a break point and keeps telling me...

CORTEX_M3_0: Error: Debug Port error occurred.
CORTEX_M3_0: Error: Debug Port error occurred.

This one appears to be in debug but it looks like it had trouble breaking at main()

CORTEX_M3_0: GEL Output:
Memory Map Initialization Complete
CORTEX_M3_0: Trouble Writing Register PC: Debug Port error occurred.
CORTEX_M3_0: Trouble Writing Register PC: Debug Port error occurred.
CORTEX_M3_0: Can't Run Target CPU: Debug Port error occurred.
CORTEX_M3_0: AutoRun: Target not run as breakpoint could not be set: Error enabling this function: Target Access Failed

Any tips? Sometimes it seems to work just fine.