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CCS 3.3 make files don't work

Has anyone had problems with the make files that CCS 3.3 generates? Our test dept has in the past (CCS 3.1) created make files to do builds. They always seemed to work. However under 3.3 (building for 64+ processors) we seem to get lots of various unresolved symbols. In the latest attempt, its not resolving references to the rtdx64xpluse.lib. The file is on the pc. Everything builds ok through CCS. Are there tricks to generating build files under 3.3 or for 64+ cpu's?