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GEL files and projects for c6747

I am using OMAPL137/C6747 DSK. It came with CCS v3.3 and I wrote code to turn a GPIO on/off and it works fine. As a next step I wanted to use CCS v4 (downloaded free from TI website) with a third part xds100 JTAG Emulator (Olimex) to run the same code on DSK. I am using the same GEL file that came with v3.3. The xds100 connects fine and the code is downloaded however the code doesnt work when I run it.

My question is: can the GEL file for CCv3.3 be used with CCSv4 as it is?

Imran