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CCS/TMS320F28335: PLOTTING FFT

Part Number: TMS320F28335

Tool/software: Code Composer Studio

I am using the control suite example program to find fft on my data set . but why my fft plot in matlab and in CCS are different in appearance despite having the same data set.  

and also,

how to find if my plots of fft obtained in CCS V6 are correct because, everytime i change anything in graph property window, the plot changes,  I am confused if my plots are correct or not?

Thank you.