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WEBENCH® Tools: how to write javascript code to execute cygwin command?

Tool/software: WEBENCH® Design Tools

I am trying to design a spatial decision support system . i have designed a website. 

I am using SLEUTH model which will predict the Urban growth for coming years.I am using windows platform , so to run SLEUTH model i am using Cygwin . 

I am thinking to do like : from one dropdown button i will choose year , so it will read the predict file from a local folder then after clicking submit button it will execute the cygwin command to run sleuth model and show the output.