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CC2340R2: SysConfig and creating a custom profile from basic GATT profile

Part Number: CC2340R2
Other Parts Discussed in Thread: SYSCONFIG

If we use SysConfig to enable basic GATT profile and decide to modify such profile to a custom service, will it retain its changes if we make changes to SysConfig and recompile its generated file? Is there another better method for creating a custom profile?

Thank you!