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CC2651R3: OTA Server Interface

Part Number: CC2651R3

My name is Pedro and I am electronic engineer in Bragalux. We have purchased an MCU for a new product design, and we have some doubts.
Instead of using OtaServer application which will run in Windows and controls the OTA Server through the serial port, I want to write some C Program which will run on the external controller (Linux OS), which will communicate to the ZigBee Device with OTA Server functionality. The interface between my controller and zigbee device will be UART. Is this possible? Do you have some resource, which could help me?