What might cause a 3.0 device like a flash drive to communicate through the TUSB8040A at high-speed over the 2.0 channel instead of using the super-speed channel?
I verified that the flash drive communicated at an average of 98 MB/s when connected directly to the PC (which exceeds the 60 MB/s max high speed rate), so I'm sure it was using the super-speed channel when connected directly to the PC. The average transfer rate when connected through the TUSB8040A was only 27 MB/s.