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Hi Toshi,
Yes, you can use Mode #3 for MODE_SEL0 (Table 7). If you look at the 3 columns of Mode, CSI Lane, and Replicate, they form the 3 bit decode of this analog input. It ranges from 000 to 111, and the last column of Output Mode describes what each row means.
The Mode column for MODE_SEL1 (Table 8) is similar, it just pairs with the CSI_SEL column to show the 3 bit decode. Mode #1 in this table corresponds to CSI port 0 being active, 5Mbps back channel rate, and STP cable. If that matches the customer application, then this mode is correct.
Thanks,
Jason