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DS80PCI800: DS80PCI800 Application problems

Part Number: DS80PCI800

Our company is to apply the chip to the NTB connection of this end CPU and the end-to-end CPU, and this x16 PCIE link is connected to the opposite end as a PORT.The connection diagram is shown below.

The purple part is the partial link between the CPU and the polarity reversal, which is related to the chip DS80PCI800SQE.

The red part is the place we want to confirm. Is the polarity reversal unacceptable here?

In addition, the PCIE signal is in line reverse (as shown below) in the case of DS80PCI800SQE. Is this acceptable?

Thank you very much!