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Hello Musa,
These devices are pin and software compatible when you are upgrading from TM4C1294NCPDTI3R up to TM4C129ENCPDTI3R. There would be no issue with replacing a TM4C1294NCPDTI3R with the TM4C129ENCPDTI3R variant instead.
The lone difference is the hardware encryption peripherals that are provided with the TM4C129ENCPDT.
Best Regards,
Ralph Jacobi