The code generated for the following two functions seems to use the wrong register in file etpwm.c:
void etpwm2GetConfigValue(etpwm_config_reg_t *config_reg, config_value_type_t type)
config_reg->CONFIG_TBCTL = etpwmREG1->TBCTL;
config_reg->CONFIG_TBPHS = etpwmREG2->TBPHS;
void etpwm5GetConfigValue(etpwm_config_reg_t *config_reg, config_value_type_t type)
config_reg->CONFIG_TBCTL = etpwmREG1->TBCTL;
config_reg->CONFIG_TBPHS = etpwmREG5->TBPHS;
The functions for PWM modules 1, 3, 4 6 and 7 don't have this.