TMS320F28379D: Sycnronization problem of ePWMs in SIMULINK

Part Number: TMS320F28379D

Tool/software:

Hello, 

I am generating a total of 3 ePWMs from the DSP, and 2 of them are sinusoidal ePWMs (SPWM) signals, one is a constant ePWM, from MATLAB SIMULINK.

I am facing an issue with changing the shape of PWM signals. After some time, the PWM signals start to change it's shape without having any feedback or closed-loop design. 

I shared the oscilloscope images; you can see the changes clearly. Those signals are taken from the output of the logic gates. (The signals are also changing once I measured them from the DSP pins.)

I also shared the configurations of the ePWM (the first 5 images are for ePWM1) blocks. I synchronized ePWM1 and ePWM2, but it is still changing its shape. What could be the issue here?