I have almost exactly the same problem.
Except that I am using CCS4.
Previously I was using CCS3, without any warning.
I have upgraded to CCS4 and have the following warning:
Section ".bios" is found in "C:/Program Files/Texas Instruments/bios_5_41_10_36/packages/ti/bios/lib/bios_NONINST.a55L<fxn_c.o55 L>", this could cause potential compatibility problem. Please use 4.1.x tools or update your DSP BIOS
I am definitely using the correct tools, I checked the MAP file as suggested in this thread.
Anyway I can get rid of this warning?