Where does the EMIFA Clock get set? Is it in UBL, U-Boot, or Linux? I'm using am180x-evm-sdk-src-05.05.00.00, with OMAP-L138_FlashAndBootUtils_2_40. For this combination, what is the EMIFA Clock frequency? There is a spreadsheet available for calculating the NAND controller register values, but it assumes an EMIFA clock frequency of 100MHz:
http://processors.wiki.ti.com/index.php/Programming_Asynchronous_EMIF_on_OMAP-L13x_/_C674x_/_AM1x