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AM335x deassert periodic interrupt from rtc

How do you deassert periodic interrupt from RTC?

RTC_STATUS_REG (20.3.5.15) from AM335X TRM mentions you can clear interrupts for alarms but it doesn't say anything about how you should handle periodic interrupt. 

What happens for me is, I have an interrupt handler for periodic interrupt which should be triggered every second and it does get that trigger however every second interrupt handler gets called more than once. I believe interrupt is active for sometime because number of calls to handler per trigger depends on how much I do in the handler.

Am I missing something from documentation?