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PCIE slows down after running the DSP program one time

Hi.  I am using the DM8148, pcie configured as RC mode, with C6657, pcie configured as EP mode.  The first time the ARM and DSP are loaded and run the time for pcie read is faster (9ms).  If I stop the application and reload and run, the pcie read is slower (18ms).  In order to get back to the faster pcie read, I have to cycle power on the device and reload and run again, otherwise the pcie read time takes 18ms always.  What could be slowing PCIE read down?  Any suggestions on where to look?  PCIE write seems to always be the same speed.  

Thanks,

Kim