I'm going to elaborate more now that i have a better idea of my problem, the instructions I found to install the WinCE side of things is InstallGuide_WinCE_OmapL138.pdf and it briefly says you need to build the dsp side using make. I'm on windows so obviously its not so simple.
I found someone else mentioning how to do it using MinGW but the version I have doesn't work with the make file, and I'm not sure which one to install that will make it work. The other option is trying to load the samples into a project in code composer 4, but since it gets a lot of it's paths through scripts or something I'm a little afraid to mess with it since it doesn't have a project already made.
I used the IDE to build it but it doesn't mention building the DSP side until you get to running/testing it, which my bins were missing.
