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LMK5B12204: Clock drift after Multiple EEPROM writes.

Part Number: LMK5B12204

Hi ,
I wanted to write the register configs to EEPROM i was able to write and boot succesfully . 
But after 3 to 4 EEPROM writes the output clock had a constant frequency drift in all its outputs.
I read the NVMCNT it was less than 10. And the APLL1 and APPL2 are not locking.
My input XO is correct.
How to resolve this Issue ? 
Can I know Why is this Issue caused.