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TUSB9261: Advice on flashing - Content of EEPROM not matching hex/bin files

Part Number: TUSB9261

Team,

my customer cannot use flashburner in their production environment. They have an adapter for the SPI EEPROM and want to flash it before placing it on the board.
They took the given TUSB9261 hex/bin file and compared it to the contect of an EEPROM that was flashed using flashburner.
The data does not match

This E2E thread talks about a similar issue.

Is my understanding correct that they should flash one EEPROM using Flashburner and use this image as a "master" for all other flashing processes?
Is this also true for the adapter they are using to program the EEPROM?

Can you verify my understanding?

Thanks!