Hello Hung Nguyen,
I have the same problem for selecting a model for RX_D3/RX_D2/RX_D1/RX_D0. In my tool it say these RX_Data pins have only lvds as a model selector.
As you showed an example in free Visual IBIS editor, eventhough if you select RX_D3 pin on the left side of the tool , on the right side it shows many available models,but if you try selecting them it doesnot work. It returns back to LVDS not GPIO.
Could you please check it once again.
Regards,
Sravan