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Execution from flash very slow.

Hello,

I'm working on 3 phase rectifier control on the F28335. When I run the program from RAM, there is no problem, but when I run from flash, execution speeds are terrible. I'm noticing a 200% drop in speed. I'm following the SPRA958I application note. Please find the project at https://www.dropbox.com/sh/gmdoqwgqfxjrbim/CxcOck6lMB . I'm switching the rectifier at 20kHz and running the  ControlISR at the same speed, but when I run it from FLASH, the ControlISR falls to 80Hz.

Please let me know what I am doing wrong. I have been unable to fix the problem for quite some time.

Thank you and best regards