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DP83867IR: MSP430 LaunchPad with USB-2MDIO GUI tool

Part Number: DP83867IR

DP83867IRRGT PHY transceiver is interfaced with a Xilinx FPGA. When MSP430 LaunchPad and USB-2MDIO GUI tool are used for accessing PHY transceiver register for debugging via MDIO and MDC signals( LaunchPad MDC(P1.4) and MDIO(P1.5)), does the MDIO/MDC traces on our PCB board need to be disconnected? Or it doesn't matter, just connect MSP430 LaunchPad P1.4 to MDC signal and P1.5 to MDIO signal?

Please advise

Thanks,

Jimmy