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Tool/software: TI-RTOS
regarding this question:
RTOS/TM4C1294NCPDT: Upgrading from 2.1.2.111 to 2.1.4.178 kills the USB - Arm-based microcontrollers...
I have found out that the answer is the newly added required calls:
USBDCDFeatureSet(0, USBLIB_FEATURE_CPUCLK, &ui32SysClock);
USBDCDFeatureSet(0, USBLIB_FEATURE_USBPLL, &ui32PLLRate);