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TMS320F28388D: PLL to external clock

Part Number: TMS320F28388D

I have an application where I may (or may not) have an external clock timing a control loop.  Ideally, the loop will be controlled (synchronized) to an external clock at 2kHz (connected to XINT1).  If this input is missing, then I need to 'free run' at 2kHz (TIMER1 for instance).  

Should I be considering using one of the EPWMs instead of timer 1?  I know the EPWMs can be synchronized with external inputs but I'm not sure how well this would work out since it seems to me that my PWM frequency would need to be set to the lower limit.  In other words the external clock would need to always be a higher frequency than the PWM frequency. 

I am assuming my external clock (if available) will be 2kHz (+/-10Hz).

Bob