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LMX2572EVM: Phase synchronization using LMX2572

Part Number: LMX2572EVM

Dear forum members 

we are phase coherent switching between two frequencies  using the LMX2572EVM.

We facilitated it in software through toggling  VCP_PHASE_SYNC_EN:

Green and yellow is the 100MHz clock and 100MHz signal out - phase synchronization is nicely achieved. 
We were not able to facilitate this using the external pin in the following configuration:
where we input a square wave (0 to 3.4V) into the Phase Sync pin on the evaluation board. However the phase of the clock on output signal are not aligned.
My question is do we have to set a register to achieve phase synchronisation?
 

Thank you Nikolaus